Retraining
Retraining usually requires you to spend time learning from a teacher, whether that entails physical training, studying on the infosphere, or falling into shared mystical trances. Your GM determines whether you can get proper training or whether something can be retrained at all. In some cases, you'll have to pay your instructor. Some abilities, like a witchwarper's paradox, can be difficult or impossible to retrain.
When retraining, you generally can't make choices you couldn't make when you initially selected the original option. For instance, you can't replace a skill feat you chose at 2nd level for a 4th-level one, or for one that requires prerequisites you didn't meet at the time you took the original feat. If you don't remember whether you met the prerequisites at the time, ask your GM to make the call. If you cease to meet the prerequisites for an ability due to retraining, you can't use that ability. You might need to retrain several abilities in sequence in order to get all the abilities you want.
Feats
Skills
You can also spend a week to retrain an initial trained skill you selected during character creation.